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How to Choose the Best Employee Management Software for Your Business

HR Technology
Published on: Feb 16, 2025
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Discover how a powerful HRMS system streamlines payroll, boosts productivity, and enhances employee engagement with solutions like Runtime HRMS and Runtime Workman.

Introduction 

Employees are the most important aspect of any business. Nowadays managing a workforce is not an easy task. From attendance to payroll management to compliance everything has to be taken care of by the employer and the person responsible for smooth management is an HR professional. Everything cannot be managed manually as manual attendance solutions like biometric systems or Excel spreadsheets won’t be reliable but are more error-prone if considered for the long run.  

So, what’s the alternative to streamline this entire process? Let EMS take over. Employee management systems will help you transform your entire payroll and compliance to performance management, using everything from one automated software. However, you might face difficulties choosing the right software for your industry. Every sector has its unique employee management challenges, for example: the healthcare sector needs shift scheduling whereas the retail industry might need more compliance clarity. Selecting the right employee management software requires understanding your business needs, key software features, and industry-specific considerations.   

Understanding Employee Management Software 

Before choosing employee management software let's understand what it does and what are the different types of EMS available in the market.  

What is Employee Management Software? 

Be it 10 or 100 employees, managing employees seems to get difficult as the employee count grows. Employee management software (EMS) is a digital solution that helps all sorts of businesses to manage and automate HR-related tasks. Employee management software will help you to manage the following tasks:  

  • Employee time and attendance tracking – Calculating work hours is essential as it plays a major role during payroll processing. Hence, these systems help you track clock-ins and clock-outs for every employee along with more essential features such as shift management, leave management, salary structures, etc.  
  • Payroll management – Ditch your Excel sheets and your payroll management can be done using the same employee management software. Repetitive tasks like salary calculations, tax compliance and benefits administration.  
  • Performance management – The easiest way to track employee goals, performance reviews, and feedback in just one software. You can also assign tasks and deadlines across multiple teams to ensure efficient task management which can later help in performance reviews.  
  • Recruitment and onboarding – Simplify hiring processes and new employee integration. Collect documents and important forms in just a few clicks and store all of the employee data in the software.  
  • Compliance management – Helps businesses adhere to labor laws and industry regulations. Keep up with the ever-changing compliances as these things are quite difficult to manage manually.  

A comprehensive solution like Runtime HRMS and Payroll Software offers all these features in a single platform, making it a great choice for SMBs and HR managers looking to automate and streamline operations.  

Types of Employee Management Software 

Online Employee Management Software (EMS) are available in different types, each designed for specific business needs:  

  1. HR Suites – Comprehensive systems that manage everything from hiring to payroll 
  2. Workforce Management Software – This online employee management software mainly focuses on employee scheduling, attendance, and productivity.  
  3. Time Tracking Software – Tracks work hours and project-based time logs.  
  4. Online Payroll Management Software – Specializes in payroll processing and tax calculations including compliance management.  

Cloud-Based vs. On-Premises Solutions 

  • Cloud-based software offers remote access, scalability, and lower upfront costs, making it ideal for small businesses.  
  • On-premises solutions provide more control and security but require significant IT infrastructure and maintenance. 

Identifying Your Business Needs 

Every business is unique, and choosing an EMS requires evaluating your specific needs. Consider the following:  

Company Size and Workforce Complexity 

A small business with ten employees has different needs than a large enterprise with multiple locations. Software should scale with your business growth.  

Key Challenges to Address 

  1. Do you struggle with shift scheduling? (Retail, hospitality)  
  2. Is compliance a top priority? (Healthcare, finance)  
  3. Do you need better performance tracking? (Corporate offices)  
  4. Are you managing remote workers? (Technology, startups) 

Industry-Specific Needs 

  1. Retail & Hospitality: Frequent shift changes, high employee turnover.  
  2. Healthcare: Licensing and certification tracking, strict compliance rules.  
  3. Construction & Manufacturing: Safety compliance, project-based tracking.  
  4. Technology & Remote Work: Productivity tracking, flexible scheduling. 

A user-friendly employee self-service app like Runtime Workman can be particularly useful in industries with mobile and field-based employees, allowing them to mark attendance, access pay slips, and request leaves from anywhere.  

Key Features to Look for in Employee Management Software 

While different industries have specific needs, certain features are essential across all businesses:  

  • Time and Attendance Tracking 

Helps manage employee hours, overtime, and absenteeism.  

Ideal for shift-based industries like retail and healthcare.  

Solutions like Runtime HRMS offer biometric, GPS-based, QR attendance using mobile app for better accuracy. 

  • Payroll and Benefits Management 

Automates salary calculations, tax deductions, and direct deposits.  

Ensures compliance with local labor laws.  

Runtime HRMS Payroll Software simplifies payroll processing by integrating compliance tools, tax calculations, and bank integrations. 

  • Performance Management 

Allows goal setting, progress tracking, and performance reviews.  

Useful for businesses focused on employee development. 

  • Recruitment and Onboarding 

Streamlines hiring and new employee orientation.  

Reduces paperwork and administrative burden. 

  • Compliance and Security 

Ensures adherence to labor laws, safety regulations, and industry standards.  

Critical for industries like healthcare and finance. 

  • Integration Capabilities 

Should integrate with accounting software, project management tools, and communication platforms.  

Prevents duplication of work and enhances efficiency. 

  • Budget and Pricing Considerations 

Understanding the pricing structure of employee management software is crucial to making the right choice.  

  • Pricing Models 
  1. Subscription-based – Monthly or annual fees, often per user.  
  2. One-time purchase – Higher upfront cost but no recurring fees.  
  3. Freemium models – Basic features for free, with premium upgrades. 

Evaluating and Comparing Software Providers 

To ensure you make the best decision, follow these steps:  

  1. Research Reviews and Testimonials 
  2. Check third-party review sites like G2, Capterra, and Trustpilot.  
  3. Look for feedback from businesses in your industry. 
  4. Take Advantage of Free Trials and Demos 

Most software providers, including Runtime HRMS, offer free trials to test usability, features, and support.  

This is the best way to first take a trial of the software before making the final purchase. Therefore, in the trial period if the solution works out for your business you can go for it.  

Assess Customer Support and Training 

Ensure the software provider offers reliable customer support, training materials, and onboarding assistance. 

  1. Check Software Reliability and Uptime 
  2. A good EMS should have minimal downtime and strong data security measures. 
  3. Check the privacy policy of each online employee management software.  
  4. Every EMS has data retention policies too. Don’t forget to read it along with the other terms and conditions.  

Top Benefits of Using Employee Management Software 

Efficiently managing employees is crucial for any business, whether it's a startup, a small business, or a large enterprise. Manual HR processes can be tedious, error-prone, and time-consuming, which is why companies are turning to Employee Management Software (EMS). A well-implemented EMS streamlines HR operations enhances productivity, and ensures compliance with labor laws. 

A team of employees working on hr and payroll software

Here are some key benefits of using Employee Management Software like Runtime HRMS and its employee self-service app, Runtime Workman: 

Simplified and Efficient HR Processes 

One of the biggest advantages of EMS is its ability to automate and streamline HR-related tasks. From recruitment to offboarding, everything can be managed within a centralized system, eliminating the need for excessive emails, spreadsheets, and manual data entry. 

With EMS automation, businesses can:

  • Automate attendance tracking with biometric, GPS, and mobile check-ins.
  • Allow employees to apply for leaves and get approvals instantly.
  • Process error-free payroll with automatic calculations.
  • Assign shifts and manage rosters effortlessly. 

For instance, Runtime HRMS automatically integrates attendance data into payroll, ensuring accurate salary calculations while reducing HR workload. Employees can also track their work hours, raise queries, and receive real-time updates through the Runtime Workman app.

Empowering Remote and Hybrid Workforces 

In today’s world, remote and hybrid work models are becoming increasingly common. An EMS ensures employees remain connected, engaged, and productive, no matter where they are working from. 

  • Employee Self-service portals allow employees to manage HR tasks like checking payslips, marking attendance, and updating personal details.
  • Employees can log work hours and track project time, ensuring transparency between managers and teams.
  • HR teams can share important company announcements, keeping all employees informed.
  • Managers can conduct performance reviews and provide real-time feedback using goal-tracking features. 

With Runtime Workman, employees can apply for leaves, update personal records, and access important company policies—all from their smartphones. This eliminates dependency on HR for routine tasks and enhances overall efficiency. 

Secure, Centralized Employee Data Management 

HR teams deal with large volumes of sensitive employee data, including payroll details, performance records, and compliance documents. A centralized EMS ensures that all data is securely stored, easily accessible, and well-organized. 

  • EMS ensures compliance with regional labor laws by automatically documenting employment records, attendance logs, and tax filings. 
  • Access control features allow HR managers to restrict data access based on roles, reducing the risk of unauthorized access. 
  • Secure cloud-based storage means businesses no longer have to rely on scattered spreadsheets or physical records. 

With Runtime HRMS, businesses can stay audit-ready at all times while ensuring compliance with labor regulations. 

Boosting Employee Engagement and Productivity 

Engaged employees are more motivated, productive, and loyal to the company. An EMS facilitates open communication, performance tracking, and employee recognition, helping businesses build a strong workplace culture. 

  • Transparent Communication: Employees can raise requests, seek clarifications, and stay informed about company updates via the self-service portal. 
  • Goal Setting & Performance Tracking: Managers can set Key Result Areas (KRAs) and track progress effectively.
  • Training & Development: Many EMS platforms include learning management systems (LMS) where employees can access training materials and upskill at their own pace.
  • Feedback Mechanism: Employees can provide and receive feedback on their work performance, fostering continuous improvement. 

For example, Runtime HRMS offers goal-setting and performance review features that enable HR managers to monitor employee progress, provide timely feedback, and recognize top performers. 

Real-Time Workforce Insights and Analytics 

HR analytics and reporting are crucial for informed decision-making. An EMS provides businesses with real-time data on employee performance, attendance trends, and HR metrics, helping HR teams identify and address challenges proactively. 

Key insights EMS provides: 

  1. Attendance and absenteeism trends. 
  2. Payroll expense breakdown. 
  3. Employee performance reports (top performers vs. improvement areas). 
  4. Turnover rates and hiring trends. 

Scalability for Growing Businesses 

As a company grows, its workforce management needs become more complex. An EMS adapts and scales with the organization, ensuring that HR operations remain efficient at every stage of business expansion. 

Key scalable features:

  1. Seamless addition of new employees.
  2. Expansion to multiple locations without operational disruptions.
  3. Integration with third-party tools (accounting, project management, payroll software).
  4. AI-driven performance tracking and HR automation for large-scale organizations. 

For small and medium-sized businesses, Runtime HRMS offers a cost-effective, scalable solution that evolves with their workforce needs. 

Final Thoughts: Why Invest in an Employee Management System? 

An Employee Management System is no longer a luxury—it’s a necessity for businesses that want to streamline HR processes, enhance employee experience, and improve overall productivity. 

To recap, here’s what an EMS can do for your business: 

  • Save time by automating HR workflows.
  • Improve payroll accuracy with integrated attendance tracking.
  • Enhance employee engagement with employee self-service portals. 
  • Boost security by centralizing HR data.
  • Provide real-time insights for better decision-making.
  • Scale with business growth, ensuring long-term efficiency. 

Ready to transform your HR processes? Start exploring Runtime HRMS and Runtime Workman today to experience a smarter way to manage your workforce.  

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About the Author
Mamta Fasge

Mamta Fasge

Mamta is an engineer turned digital marketer with years of experience in building brands from scratch. She is passionate about continuous learning and also enjoys reading and mastering new marketing skills